How the Bank of Japan builds its daily yen rate series
The Bank of Japan has published Foreign Exchange Rates on its website every business day since 4 January 2007. The figures are based on information from market participants and the Bank states plainly that they are subject to revisions and corrections.
The recent window is short: the past seventy business days appear in the daily list, and anything longer has to come from the BOJ Time-Series Data Search. Within that search, US dollar/yen and euro/US dollar spot rates at 09:00 and 17:00 JST are mid rates of bid and offer. Euro/yen spot at those times is not carried in the search at all, and has to be derived by multiplying the two rates that are. A list of corrections sits alongside the series, running back through amendments to swap and spot turnover figures in 2022, 2023 and 2025.

What it means
A published correction list is a feature, not an embarrassment. It tells you the series is maintained after release, and it lets anyone who stored a figure know whether the version they hold is still the current one - which is exactly what a downstream model needs and rarely gets.
The euro/yen omission is the practical trap. A cross rate computed by multiplying two mid rates is not the same object as a quoted euro/yen mid: the bid-offer spreads of the two legs do not cancel, and the derived number carries an error the quoted one does not. For most purposes it does not matter; for anything that reconciles against a counterparty's books it does, and the Bank is telling you which of its numbers are measured and which are arithmetic.